BtaEX6078839 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69290129-69291543:-
Coord C1 exon
chr21:69291438-69291543
Coord A exon
chr21:69290792-69290928
Coord C2 exon
chr21:69290129-69290268
Length
137 bp
Sequences
Splice sites
3' ss Seq
CGCCCCCTGTGCCTTTGCAGTGT
3' ss Score
10.14
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCAAAGGCACACCAGCTGAGCATCAAGTCCTTCTCCAGCCCCACGCAATGCAGCCACTGCACCTCCCTGATGGTGGGGCTGATCCGCCAGGGCTACGCCTGCGACG
Seq A exon
TGTGCTCGTTTGCCTGCCACGTGTCCTGCAGAGACCGCGCCCCCCAAGTGTGCCCCATCCCCCCCGAGCAGTCCAAGCGGCCTCTAGGTGTGGACGTGCAGAGAGGCATCGGAACAGCCTACAAGGGCTACGTGAAG
Seq C2 exon
ATCCCCAAACCAACCGGGGTGAAGAAGGGGTGGCAGCGAGCCTTCGCGGTGGTCTGTGACTGCAGGCTCTTCCTGTACGACCTGCCCGAGGGCAAGTCCGCCCAGCCCGGCGTCCTGGCCAGCCAAGTCCTGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456-'31-42,'31-38,32-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(60.4=88.9)
A:
PF0013017=C1_1=PD(37.7=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGCACACCAGCTGAG
R:
CCAGGACTTGGCTGGCCA
Band lengths:
239-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]