DreEX6044376 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18519765-18521209:-
Coord C1 exon
chr20:18521104-18521209
Coord A exon
chr20:18520804-18520940
Coord C2 exon
chr20:18519765-18519904
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTGCATCTTTCAGTAT
3' ss Score
9.15
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CCCAAAGCCCATCAGCTGAGCATCAAGACCTTCTCCAGCCCGACTCAGTGCACTCACTGTACTTCACTGATGGTGGGCCAGATGCGTCAAGGATACGCCTGCGAGG
Seq A exon
TATGCTCTTTCATCTGCCACGTGTCCTGTAAAGACAACGCACCCCAGCTCTGCCCCATTCCTCCCGAGCAGACCAAGAGGCCTCTGGGTATTGATGTGCAGAGGGGCATTGGCACTGCGTACAAAGGTTTTGTCAGG
Seq C2 exon
ATCCCGAAGCCCACCGGAGTGAAGAAGGGCTGGCAGAGAGCATATGCTGTAGTGTGTGACTGTAAACTCTTTCTCTACGAGGTGCCAGAAGGGAAGTCCACTCAACCTGTCGTGATGGCCAGTCAGGTCCTTGACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'30-33,'30-32,31-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(60.4=88.9)
A:
PF0013017=C1_1=PD(37.7=43.5),PF0016924=PH=PU(5.9=15.2)
C2:
PF0016924=PH=FE(38.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCCCATCAGCTGAGCAT
R:
CAAGTCAAGGACCTGACTGGC
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]