GgaEX1014024 @ galGal4
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49828416-49831617:-
Coord C1 exon
chr5:49831512-49831617
Coord A exon
chr5:49829096-49829232
Coord C2 exon
chr5:49828416-49828555
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTCTTTTGTACTTAGTGT
3' ss Score
8.9
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CCTAAAGCTCACCAGCTCAATATCAAGTCATTTACAAGCCCTACTCAGTGCAGTCATTGTACCTCACTTATGGTGGGATTGGTTCGACAAGGCTATGCCTGTGATG
Seq A exon
TGTGTTCATTTGCATGCCATGTTTCCTGCAAGGACAGCGCACCTCAGGTCTGCCCTATACCACCTGAACAAGCCAAAAGGCCTCTTGGTGTGGATGTACAAAGAGGAATAGGAACTGCCTATAAAGGTTATGTCAAG
Seq C2 exon
GTTCCAAAGCCTACAGGAGTCAAGAAAGGGTGGCAGAGAGCCTATGCTGTTGTCTGTGACTGTAAACTCTTCTTATATGATGTGCCTGAAGGAAAATCCACCCAGCCTGGAGTTGTTGCAAGTCAAGTCTTGGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'34-40,'34-36,38-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(60.4=88.9)
A:
PF0013017=C1_1=PD(37.7=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCAGCTCAATATCAAGTCA
R:
TCCAAGACTTGACTTGCAACA
Band lengths:
234-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]