MmuEX0010405 @ mm10
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111304972-111306547:-
Coord C1 exon
chr12:111306442-111306547
Coord A exon
chr12:111305666-111305802
Coord C2 exon
chr12:111304972-111305111
Length
137 bp
Sequences
Splice sites
3' ss Seq
GGGGCTGTCCTCTTTTTCAGTCT
3' ss Score
8.29
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCCAAAGCCCACCAGTTCAGCATCAAGTCCTTCCCTAGCCCCACCCAGTGCAGCCACTGCACGTCCTTGATGGTCGGACTGATCCGACAGGGCTACGCCTGTGAGG
Seq A exon
TCTGTGCATTTTCCTGCCATGTGTCCTGCAAAGACAGCGCTCCCCAGGTGTGCCCCATACCTCCTGAGCAGTCCAAGAGGCCTCTTGGCGTAGACGTGCAGAGGGGCATAGGCACGGCCTACAAGGGCTACGTCAAG
Seq C2 exon
GTCCCAAAGCCCACAGGCGTGAAGAAAGGATGGCAGAGGGCTTACGCCGTGGTCTGTGACTGCAAACTCTTCCTGTACGACCTGCCAGAAGGGAAGTCGACCCAGCCCGGTGTCGTTGCCAGTCAAGTCTTGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'43-47,'43-46,44-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(60.4=88.9)
A:
PF0013017=C1_1=PD(37.7=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCCCACCAGTTCAGCAT
R:
GAGGTCCAAGACTTGACTGGC
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types