GgaEX1014024 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52433035-52436236:-
Coord C1 exon
chr5:52436131-52436236
Coord A exon
chr5:52433715-52433851
Coord C2 exon
chr5:52433035-52433174
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTCTTTTGTACTTAGTGT
3' ss Score
8.9
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CCTAAAGCTCACCAGCTCAATATCAAGTCATTTACAAGCCCTACTCAGTGCAGTCATTGTACCTCACTTATGGTGGGATTGGTTCGACAAGGCTATGCCTGTGATG
Seq A exon
TGTGTTCATTTGCATGCCATGTTTCCTGCAAGGACAGCGCACCTCAGGTCTGCCCTATACCACCTGAACAAGCCAAAAGGCCTCTTGGTGTGGATGTACAAAGAGGAATAGGAACTGCCTATAAAGGTTATGTCAAG
Seq C2 exon
GTTCCAAAGCCTACAGGAGTCAAGAAAGGGTGGCAGAGAGCCTATGCTGTTGTCTGTGACTGTAAACTCTTCTTATATGATGTGCCTGAAGGAAAATCCACCCAGCCTGGAGTTGTTGCAAGTCAAGTCTTGGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'24-30,'24-29,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(60.4=88.9)
A:
PF0013017=C1_1=PD(37.7=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCAGCTCAATATCAAGTCA
R:
TCCAAGACTTGACTTGCAACA
Band lengths:
234-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]