RnoEX6029849 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135759383-135761340:-
Coord C1 exon
chr6:135761235-135761340
Coord A exon
chr6:135760044-135760180
Coord C2 exon
chr6:135759383-135759522
Length
137 bp
Sequences
Splice sites
3' ss Seq
AGGACTGTCCTCTTTTTCAGTCT
3' ss Score
8.09
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CCCAAGGCACACCAGTTCAGCATCAAGTCCTTCCCCAGCCCCACCCAGTGTAGCCACTGTACGTCCTTGATGGTTGGGCTGATCCGACAGGGCTATGCCTGTGAGG
Seq A exon
TCTGCGCGTTTTCCTGCCATGTGTCCTGCAAAGACAGCGCTCCCCAGGTGTGCCCCATACCTCCTGAGCAGTCCAAGCGGCCTCTCGGCGTAGACGTGCAGAGGGGCATAGGCACAGCCTACAAGGGCTACGTCAAG
Seq C2 exon
GTCCCGAAGCCCACAGGCGTGAAGAAAGGGTGGCAGCGGGCTTACGCAGTGGTCTGTGACTGCAAGCTCTTCCTGTACGACCTGCCAGAAGGGAAGTCCACCCAGCCTGGGGTCATCGCCAGTCAAGTCTTAGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'45-43,'45-42,46-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(60.4=88.9)
A:
PF0013017=C1_1=PD(37.7=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCACACCAGTTCAGCAT
R:
GAGGTCTAAGACTTGACTGGCG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]