BtaEX6078841 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69287419-69288998:-
Coord C1 exon
chr21:69288917-69288998
Coord A exon
chr21:69287595-69287811
Coord C2 exon
chr21:69287419-69287481
Length
217 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTTCTGTCCTGAAGGTG
3' ss Score
8.9
5' ss Seq
TGGGTGCGT
5' ss Score
5.46
Exon sequences
Seq C1 exon
AGATGAAGAGTTCTCTGTGAGCTCCGTCCTGGCTTCAGACGTCATACATGCCTCACGCCGAGATATTCCATGTATATTCAGG
Seq A exon
GTGACGGCCTCTCTCTTAGGTGCCCCTTCTAAGACCAGCTCGCTGCTCATCCTGACAGAGAACGAAAATGAGAAGCGGAAATGGGTGGGGATCTTGGAGGGCCTGCAGGCCATCCTCCAGAAGAACCGCCTGCAGAGCCAGGCGGTGCACGTGCCCCAGGAGGCCTACGACAGCTCGCTGCCCCTCATCAAGGCCGTGCTCACGGCCGCCATCCTGG
Seq C2 exon
ACGGGGACCGGATCGCTATTGGCCTCGAGGAAGGGCTCTACGTCATAGAGGTGACCCGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456-'34-48,'34-45,36-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
ENSBTAT00000021879fB1555
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAAGAGTTCTCTGTGAGCT
R:
ATCCCGGGTCACCTCTATGAC
Band lengths:
144-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]