DreEX6044378 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18514916-18518475:-
Coord C1 exon
chr20:18518394-18518475
Coord A exon
chr20:18518094-18518310
Coord C2 exon
chr20:18514916-18514978
Length
217 bp
Sequences
Splice sites
3' ss Seq
TGTGTACAATGTTTGCGCAGGTA
3' ss Score
7.33
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGATGAGGAGTTCTCTGTTAGCTCTGTGTTGGCATCTGATGTGATCCATGCCAACCATAAAGACGTTCCCTGTATATTCAGG
Seq A exon
GTAACCTCGTCGGCTCTGAAATCCTCGATCCGGCCAGTTCCTTTGCTGATTTTAGCTGAGAGCGAGGCGGAGAAGAGGAAGTGGGTGGGCATCCTAGAGGGCCTGCAGAGCATCCTAGCCAAAAACCGGCTGAAGAACCGCGTGGTGCATGTGCTGCACGAGGCCTACGACAGCAGCCTACCTGCCATCAAAACTACACTTTCTGCTGCCATCGTAG
Seq C2 exon
ATCGAGAACGAATTGTCTTGGGGACAGAAGATGGCCTTTTTGTAGTCGAGATCACCAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'33-37,'33-35,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.7=100)
A:
PF0016924=PH=PD(30.3=49.3),PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGTTCTCTGTTAGCTCTGT
R:
TCTCTGGTGATCTCGACTACA
Band lengths:
140-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]