GgaEX0017220 @ galGal4
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49824515-49826867:-
Coord C1 exon
chr5:49826786-49826867
Coord A exon
chr5:49824966-49825182
Coord C2 exon
chr5:49824515-49824577
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTGTCTGTTAAAAGGTG
3' ss Score
9.94
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
AGATGAAGATTTTTCTGTGAGCTCTGTCCTAGCACCAGATGTAATACATGCAACTCGTAAAGACATCCCTTGTATATTCAGG
Seq A exon
GTGACAGCTTCTCTCTTAGGTTTGCCTTCAAAGTCTTGTTCTCTGCTGATCCTGACAGAAAATGAGAATGAGAAGAGAAAGTGGGTTGGAATTCTAGAAGGGTTGCAGTCTATCCTGCACAAAAACAGACTGAAAAACCAGGTCGTGCATATTCCACAGGAAGCCTATGACAGTACACTGCCTCTTATTAAAGCGAGTTTAGCTGCTGCTATCGTAG
Seq C2 exon
ATCGAGATAGAATAGCAATTGGTTCAGAAGAAGGACTGTATGTGATAGAAGTGACCCGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(1.5=5.5)
C2:
PF0078017=CNH=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTTTTCTGTGAGCTCTGTCCT
R:
CGTCACGGGTCACTTCTATCAC
Band lengths:
140-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]