RnoEX6029850 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135756650-135758383:-
Coord C1 exon
chr6:135758302-135758383
Coord A exon
chr6:135756811-135757027
Coord C2 exon
chr6:135756650-135756712
Length
217 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTCTCTCATGAAGGTG
3' ss Score
8.16
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
AGATGACGAGTTTGCTGTGAGCTCAGTCCTGGCCTCAGATGTCATCCATGCTACACGCCGAGACATCCCGTGTATATTCAGG
Seq A exon
GTGACGGCCTCTCTCTTAGGTTCACCTTCTAAGACCAGCTCACTGCTCATCCTGACAGAGAACGAGAATGAAAAGAGGAAGTGGGTTGGGATCCTGGAAGGGCTGCAGGCTATCCTCCACAAGAACCGGCTGAGGAGCCAGGTGGTGCACGTGGCACAGGAAGCGTACGACAGCTCACTGCCGCTCATCAAGACCGTCCTGGCTGCCGCTATTGTGG
Seq C2 exon
ATGGAGACAGAATTGCGGTCGGCCTGGAAGAAGGGCTCTACGTCATTGAGCTCACCCGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'49-48,'49-45,51-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTTTGCTGTGAGCTCAG
R:
CATCTCGGGTGAGCTCAATGAC
Band lengths:
140-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]