GgaEX0017220 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52429096-52431486:-
Coord C1 exon
chr5:52431405-52431486
Coord A exon
chr5:52429585-52429801
Coord C2 exon
chr5:52429096-52429196
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTGTCTGTTAAAAGGTG
3' ss Score
9.94
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
AGATGAAGATTTTTCTGTGAGCTCTGTCCTAGCACCAGATGTAATACATGCAACTCGTAAAGACATCCCTTGTATATTCAGG
Seq A exon
GTGACAGCTTCTCTCTTAGGTTTGCCTTCAAAGTCTTGTTCTCTGCTGATCCTGACAGAAAATGAGAATGAGAAGAGAAAGTGGGTTGGAATTCTAGAAGGGTTGCAGTCTATCCTGCACAAAAACAGACTGAAAAACCAGGTCGTGCATATTCCACAGGAAGCCTATGACAGTACACTGCCTCTTATTAAAGCGAGTTTAGCTGCTGCTATCGTAG
Seq C2 exon
ATCGAGATAGAATAGCAATTGGTTCAGAAGAAGGACTGTATGTGATAGAAGTGACCCGTGACGGTAAGTTAGGCCATAATGAATGCAGTAATTATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'28-34,'28-32,29-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(1.5=5.5)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAAGATTTTTCTGTGAGCTCTG
R:
TACTGCATTCATTATGGCCTAACT
Band lengths:
172-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]