BtaEX6079077 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047606 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr21:71366178-71367639:+
Coord C1 exon
chr21:71366178-71366366
Coord A exon
chr21:71367425-71367499
Coord C2 exon
chr21:71367581-71367639
Length
75 bp
Sequences
Splice sites
3' ss Seq
GACATGCCTCCCTTCCACAGCTT
3' ss Score
9.33
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTCCACGCCATGGACACGCTGCACAGGAGCGTGTATGACGTTGCCAAGGCCATCTCAGCCCTGGTGCCGCAGGGTGGGCCCGTGCTCTGCAGGGACGAGATGGAGGAGTGGTCAGCCTCAGAGGCCAGCCTTTTTGAGGAGGCCCTGGAAAAGTACGGGAAAGACTTCACAGACATTCAGCAAGACTTT
Seq A exon
CTTCCCTGGAAGTCACTCACCAGCATCATCGAGTATTACTACATGTGGAAGACCACCGACAGATACGTGCAGCAG
Seq C2 exon
AAACGCTTGAAAGCGGCTGAAGCGGAGAGCAAGTTAAAGCAAGTTTATATCCCCAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047606-'10-19,'10-18,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.020 C2=0.975
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACGTTGCCAAGGCCATC
R:
CCGCTTCAGCCGCTTTCAAG
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]