HsaEX0040382 @ hg19
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105927102-105929888:+
Coord C1 exon
chr14:105927102-105927290
Coord A exon
chr14:105929521-105929595
Coord C2 exon
chr14:105929830-105929888
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACACGCCTCCTCCCACCCAGCTC
3' ss Score
5.63
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCCACGCCATGGATACTCTCCACAAGAACATCTACGACATCTCCAAGGCCATCTCGGCGCTGGTGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACGAGATGGAGGAGTGGTCTGCATCAGAGGCCAACCTTTTCGAGGAAGCCCTGGAAAAATATGGGAAGGATTTCACGGACATTCAGCAAGATTTT
Seq A exon
CTCCCGTGGAAGTCGCTGACCAGCATCATTGAGTACTACTACATGTGGAAGACCACCGACAGATACGTGCAGCAG
Seq C2 exon
AAACGCTTGAAAGCAGCTGAAGCTGAGAGCAAGTTAAAGCAAGTTTATATTCCCAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-'17-20,'17-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.111 A=0.184 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAAGGCCATCTCGG
R:
ACTTGCTCTCAGCTTCAGC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)