RnoEX0056144 @ rn6
Exon Skipping
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137940375-137942930:+
Coord C1 exon
chr6:137940375-137940563
Coord A exon
chr6:137942477-137942551
Coord C2 exon
chr6:137942872-137942930
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGACTGCCTTGTCACCGCAGCTC
3' ss Score
5.77
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
TTTCATGCCATGGACACGCTGCACAAGAACATCTACGACATCTCCAAGGCCATCTCTGCCCTTGTGCCTCAGGGTGGGCCAGTGCTCTGCAGGGATGAGATGGAGGAGTGGTCAGCATCAGAAGCCAACCTTTTTGAGGAAGCTCTGGAAAAATATGGGAAAGATTTCACAGACATTCAGCAAGACTTT
Seq A exon
CTCCCATGGAAGTCGCTCACCAGCATCATTGAGTATTACTACATGTGGAAGACCACCGACAGATACGTCCAGCAG
Seq C2 exon
AAACGTTTGAAAGCAGCTGAAGCAGAGAGCAAGTTAAAGCAGGTTTATATTCCCAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711-'10-16,'10-14,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCCAAGGCCATCTCTGC
R:
GCTCTCTGCTTCAGCTGCTTT
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]