DreEX6055572 @ danRer10
Exon Skipping
Gene
ENSDARG00000007198 | mta1
Description
metastasis associated 1 [Source:ZFIN;Acc:ZDB-GENE-131121-353]
Coordinates
chr17:37646072-37649595:+
Coord C1 exon
chr17:37646072-37646260
Coord A exon
chr17:37649370-37649444
Coord C2 exon
chr17:37649537-37649595
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTCTTTTATCCCAGCTT
3' ss Score
6.44
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TTTCACGCCATGGACACGTTGCATAAGAACGGCTACGATATGACGCGGGCCATCGCAGCGCTGGTACCTCAGGGCGGACCTGTGCTCTGCCGGGACGAAATGGAGGAATGGAGTGCATCCGAAGCTAACCTATTTGAAGAAGCGCTGGAGAAATACGGCAAAGACTTCACTGATATTCAGCAGGACTTT
Seq A exon
CTTCCGTGGAAGTCTCTGACCAGCATCATTGAATATTACTACATGTGGAAGACCACAGACAGATACGTTCAGCAG
Seq C2 exon
AAACGATTAAAAGCAGCTGAAGCGGAGAGCAAGTTAAAGCAGGTTTACATCCCAAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007198-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.040 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATGACGCGGGCCATCG
R:
CTCTCCGCTTCAGCTGCTTTT
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]