GgaEX1037280 @ galGal3
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
NA
Coordinates
chr8:4063107-4070544:-
Coord C1 exon
chr8:4070356-4070544
Coord A exon
chr8:4069205-4069279
Coord C2 exon
chr8:4063107-4063165
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTTATGTCCCTAGCTC
3' ss Score
9.71
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTCCATGCTATGGACACTTTGCACAAAAATGTCTACGACATTTCCAAGGCGATCTCTGCGCTTGTGCCACAAGGTGGGCCAGTCCTGTGCAGAGATGAGATGGAGGAGTGGTCTGCTTCAGAGGCAAACCTCTTTGAGGAAGCACTAGAAAAATATGGAAAAGATTTCACTGACATTCAGCAAGATTTT
Seq A exon
CTCCCATGGAAATCCTTAACAAGCATAATAGAGTATTACTATATGTGGAAAACTACAGACAGATACGTTCAGCAG
Seq C2 exon
AAACGATTGAAAGCAGCAGAAGCAGAAAGCAAGCTAAAACAAGTGTATATACCCAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803-'21-21,'21-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.011 A=0.160 C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCAAGGCGATCTCTGCG
R:
TGCTTTCTGCTTCTGCTGCTT
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]