MmuEX6083285 @ mm10
Exon Skipping
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113128032-113130592:+
Coord C1 exon
chr12:113128032-113128220
Coord A exon
chr12:113130120-113130194
Coord C2 exon
chr12:113130534-113130592
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGTTGCCTTGTCCCCGCAGCTC
3' ss Score
11.78
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
TTCCATGCTATGGACACGCTGCACAAGAACATCTACGACATCTCCAAGGCCATCTCGGCCCTCGTGCCCCAGGGTGGGCCAGTGCTCTGCCGCGATGAGATGGAGGAGTGGTCCGCATCAGAAGCCAACCTTTTTGAGGAAGCTCTGGAAAAATATGGGAAAGATTTCACCGACATTCAACAAGATTTT
Seq A exon
CTCCCATGGAAGTCGCTCACCAGCATCATTGAGTATTACTACATGTGGAAGACCACCGACAGATACGTCCAGCAG
Seq C2 exon
AAACGCTTGAAAGCAGCTGAAGCTGAGAGCAAGTTAAAGCAGGTTTATATTCCCAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-'20-22,'20-21,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.983
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCGGCCCTCGTGCC
R:
CCTGCTTTAACTTGCTCTCAGCT
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types