BtaEX6079213 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016471 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:1925686-1928209:-
Coord C1 exon
chr18:1928085-1928209
Coord A exon
chr18:1926293-1926448
Coord C2 exon
chr18:1925686-1925819
Length
156 bp
Sequences
Splice sites
3' ss Seq
GGCTGCTCTTCATCTCCTAGCTC
3' ss Score
7.02
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTACCTTGCTGAGTGGATGGTGTACGGCTACCCCTCGGAAAACGTCTGGGAACTGGACCTGAAGCGGTTTGGAGCCCTCCAGAGCAGCCGAACCTTCCTGCGCCACCGTGTCATGGAGGTCATGC
Seq A exon
CTCTGCTCTATGACCTGAAGGTTCCCCGTTGGGACTTCCAGACTGGAAGGCAGTTACGCACCTCTCCTCTCTATGACCGGCTGGACGCGCAGGGAGCCAGGTGGATGGAGAAACATGGATTCGAGAGGCCAAAGTACTTCATACCACCAGACAAGG
Seq C2 exon
ACCTCCTGGCCTTGGAGCAGAGCAAGACTTTCTACAAGCCAGACTGGTTTGAGATTGTGGAGTCCGAAGTCAAGTGCTGTAAGGAAGCCGTGTGTGTCATTGACATGTCCTCTTTCACAAAGTTTGAAATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016471-'22-12,'22-11,23-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(1.4=11.6)
A:
NO
C2:
PF0157116=GCV_T=PU(5.5=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGCTGAGTGGATGGTGT
R:
TGTGAAAGAGGACATGTCAATGACA
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]