DreEX0006641 @ danRer10
Exon Skipping
Gene
ENSDARG00000103288 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:50958834-50960028:+
Coord C1 exon
chr18:50958834-50958958
Coord A exon
chr18:50959648-50959803
Coord C2 exon
chr18:50959895-50960028
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTGTGTTGTCAGCGC
3' ss Score
6.84
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTTTCTGGCGGAGTGGATGACACACGGGTACCCCAGCGCCAACGTCTGGCCTCTAGACATCAAGCGCTTCGGGAACCTGCAGAGCAGCCGCACCTTCCTGCGGCACCGGGTGATGGAGGTGATGC
Seq A exon
CGCTGCTGTATGAGCTGAAGGTTCCGCGCTGGGACTTCCAGACGGGCCGGCAGCTGCGCACCAGTCCCCTGTATGACCGGCTGGACACGCAGGGCGCCCGCTGGATGGAGAAACACGGCTTCGAGCGCGCTAAATACTTCGTCCCCGCAGGGAAGG
Seq C2 exon
ACCTGCTGGCGCTGGATCAGAGTAAGACCTTCTACAAGCCGGACTGGTTTGATATCGTGGGCGCGGAGGTGAAGTGCTGTAAGGAGGCGGTGTGTGTGATCGACATGTCCTCCTTCACCAAGTTTGAGCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103288-'16-13,'16-12,19-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(1.4=11.6)
A:
NO
C2:
PF0157116=GCV_T=PU(5.5=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGGCGGAGTGGATGAC
R:
TGGTGAAGGAGGACATGTCGA
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]