GgaEX6008922 @ galGal3
Exon Skipping
Gene
ENSGALG00000002690 | F1NG59_CHICK
Description
NA
Coordinates
chr11:1761280-1762941:-
Coord C1 exon
chr11:1762817-1762941
Coord A exon
chr11:1761516-1761671
Coord C2 exon
chr11:1761280-1761413
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTGTGACCATTGCAGCTC
3' ss Score
8.37
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTACCTGGCAGAGTGGATGGTAAATGGCTACCCATCAGAAAACGTCTGGCCTTTGGATTTGAAGCGCTTTGGTACCCTCCAGAGCAGCCGCACCTTCCTCCGTCACCGTGTGATGGAAGTGATGC
Seq A exon
CTCTCATGTGTGACCTCAAAGTTCCCCGCTGGGACTTCCAGACGGGCAGACAGCTGCGTACCTCCCCGCTGTACGACCGCCTGGATGCCCAGGGGGCCAGGTGGATGGAGAAGCACGGCTTTGAGAGGGTCAAATACTTCGTCCCACCTGGGAAAG
Seq C2 exon
ATCTGCTGGATTTGGATCAGAGCAAAACCTTCTACAAACCGGACTGGTTTGATATTGTGGGTTCCGAAGTCAAGTGCTGCAAGGAAGCAGTCTGTGTGATCGACATGTCGTCTTTTACCAAGTTTGAGATAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(1.4=11.6)
A:
NO
C2:
PF0157116=GCV_T=PU(5.5=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCAGAGTGGATGGTAA
R:
TCTCAAACTTGGTAAAAGACGACA
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]