RnoEX6060647 @ rn6
Exon Skipping
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43119868-43124021:-
Coord C1 exon
chr19:43123897-43124021
Coord A exon
chr19:43120530-43120685
Coord C2 exon
chr19:43119868-43120001
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGACTGTTTATCTGTTCTAGCTC
3' ss Score
7.32
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCTCCTAGCTGAATGGATGGTGTATGGTTACCCCTCTGAAAACGTCTGGGAATTGGACTTGCAGCGCTTTGGAGCCCTCCAGGGCAGCCGCACCTTTCTGCGCCACCGGGTCATGGAAGTTATGC
Seq A exon
CTCTGATATACGATCTGAAGGTTCCTCGTTGGGATTTCCAGACTGGAAGGCAGTTGCGCACATCTCCTCTTTATGACCGGCTGGATGCTCAAGGAGCCAGATGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCACCCAACAAGG
Seq C2 exon
ACCTTCTTGCATTAGAACAGAGCAAGACTTTCTACAAGCCAGACTGGTTTGATATTGTGGAGTCTGAAGTCAAATGCTGTAAGGAAGCTGTGTGTGTCATTGACATGTCTTCTTTCACAAAATTTGAAATAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(1.4=11.6)
A:
NO
C2:
PF0157116=GCV_T=PU(5.5=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTAGCTGAATGGATGGTG
R:
TGAAAGAAGACATGTCAATGACACAC
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]