MmuEX6038563 @ mm9
Exon Skipping
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:113645048-113648512:+
Coord C1 exon
chr8:113645048-113645172
Coord A exon
chr8:113647645-113647800
Coord C2 exon
chr8:113648379-113648512
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGAGTGTTTATCTGTTCTAGCTC
3' ss Score
6.45
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
GTTCCTAGCAGAATGGATGGTATATGGTTATCCCTCTGAAAATGTCTGGGAGTTGGATTTGCAGCGCTTCGGAGCCCTCCAGAGCAGCCGCACCTTTCTGCGCCACCGGGTCATGGAAGTTATGC
Seq A exon
CTCTGATATATGATCTGAAGGTTCCCCGTTGGGATTTCCAGACTGGAAGGCAGTTACGTACATCTCCTCTTTATGACCGGCTGGATGCTCAAGGAGCCAGATGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCACCCAACAAGG
Seq C2 exon
ACCTTCTTGCATTAGAACAGAGCAAGACTTTCTACAAGCCAGATTGGTTTGATATTGTGGAGTCAGAAGTCAAATGCTGCAAGGAAGCTGTGTGTGTCATTGACATGTCCTCTTTCACAAAATTTGAAATAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(1.4=11.6)
A:
NO
C2:
PF0157116=GCV_T=PU(5.5=26.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTAGCAGAATGGATGGT
R:
TGAAAGAGGACATGTCAATGACACA
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: