GgaEX6008922 @ galGal4
Exon Skipping
Gene
ENSGALG00000002690 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1780220-1781881:-
Coord C1 exon
chr11:1781757-1781881
Coord A exon
chr11:1780456-1780611
Coord C2 exon
chr11:1780220-1780353
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTGTGACCATTGCAGCTC
3' ss Score
8.37
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTACCTGGCAGAGTGGATGGTAAATGGCTACCCATCAGAAAACGTCTGGCCTTTGGATTTGAAGCGCTTTGGTACCCTCCAGAGCAGCCGCACCTTCCTCCGTCACCGTGTGATGGAAGTGATGC
Seq A exon
CTCTCATGTGTGACCTCAAAGTTCCCCGCTGGGACTTCCAGACGGGCAGACAGCTGCGTACCTCCCCGCTGTACGACCGCCTGGATGCCCAGGGGGCCAGGTGGATGGAGAAGCACGGCTTTGAGAGGGTCAAATACTTCGTCCCACCTGGGAAAG
Seq C2 exon
ATCTGCTGGATTTGGATCAGAGCAAAACCTTCTACAAACCGGACTGGTTTGATATTGTGGGTTCCGAAGTCAAGTGCTGCAAGGAAGCAGTCTGTGTGATCGACATGTCGTCTTTTACCAAGTTTGAGATAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'12-11,'12-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(1.4=11.6)
A:
NO
C2:
PF0157116=GCV_T=PU(5.5=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCAGAGTGGATGGTAA
R:
TCTCAAACTTGGTAAAAGACGACA
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]