BtaEX6080868 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34984750-34993385:-
Coord C1 exon
chr18:34993185-34993385
Coord A exon
chr18:34985213-34985319
Coord C2 exon
chr18:34984750-34984814
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTGGTCCCTTTGCCCCCAGCTC
3' ss Score
7.73
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ATGGCGGGCGAGGAAGACCGCGGGGACGGGGAGCCTGTATCACTGGTGACCGTGCGGGTGCAGTACCTAGAGGACACCGACCCTTTCGCATGTGCCAACTTCCCGGAGCCGCGCCGGGCCCCCACCTGCAGCCTGGACGGGGCGCTGCCCCTGGGAGCGCAGATACCCGCCCTGCACCGCCTGCTGGGGGCGCCGCTCAAG
Seq A exon
CTCGAGGACTGTGCTCTGCAAGTGTCTCCATCTGGATATTACCTGGACCCTGAGCTGTCCCTGGAAGAGCAGCGGGAGATGTTGGAGGGCTTCTTTGAAGAGATCAG
Seq C2 exon
CAAAGGGCGGAAGCCTACTCTGATCCTGCGAACCCAGCTCTCCGTGAGGGTCAATGCCATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427-'0-5,'0-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGGGGAGCCTGTATC
R:
AAGATGGCATTGACCCTCACG
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]