HsaEX6044338 @ hg19
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:17905]
Coordinates
chr16:67272806-67281561:-
Coord C1 exon
chr16:67281113-67281561
Coord A exon
chr16:67273251-67273357
Coord C2 exon
chr16:67272806-67272870
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCCCTTTGCCCCCAGTTG
3' ss Score
9.71
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CGGGATTCCCATTGGGCCCTGTGAGTGGCTAGCGGCGGCCCCGCCTCCGGCAGTGGTTACCTCCTGGCGCGCACTCGGGGACTAATCTTGGCTCCACCCCCTTCCTCGGCCCCGCCTCCGTCTGGCCCCGCCCCTCCAGCCGCGTCCGGTCCGGCCGGGCCCGAACCGCGGAGCTACAGTGTGCTTTGAGTAGAAGCTGCACTGGGGCCGGGACTCGGAGGCGCGCTGCGTGAGCCGGCCGCAGAGCCATGGCGGGCGGGGAAGACCGCGGGGACGGAGAGCCGGTATCAGTGGTGACCGTGAGGGTGCAGTACCTGGAAGACACCGACCCCTTCGCATGTGCCAACTTTCCGGAGCCGCGCCGGGCCCCCACCTGCAGCCTGGACGGGGCGCTGCCCTTGGGCGCGCAGATACCCGCGGTGCACCGCCTGCTGGGAGCGCCGCTCAAG
Seq A exon
TTGGAGGATTGTGCTCTGCAAGTGTCTCCCTCCGGATACTACCTGGACACCGAGCTGTCCCTGGAAGAGCAGCGGGAGATGCTGGAGGGCTTCTATGAAGAGATCAG
Seq C2 exon
CAAAGGGCGGAAGCCCACGCTGATCCTTCGGACCCAGCTCTCTGTGAGGGTCAACGCTATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'1-5,'1-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCGGTATCAGTGGTGA
R:
CCAAGATAGCGTTGACCCTCAC
Band lengths:
238-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)