HsaEX6044338 @ hg38
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67238903-67247658:-
Coord C1 exon
chr16:67247210-67247658
Coord A exon
chr16:67239348-67239454
Coord C2 exon
chr16:67238903-67238967
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCCCTTTGCCCCCAGTTG
3' ss Score
9.71
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CGGGATTCCCATTGGGCCCTGTGAGTGGCTAGCGGCGGCCCCGCCTCCGGCAGTGGTTACCTCCTGGCGCGCACTCGGGGACTAATCTTGGCTCCACCCCCTTCCTCGGCCCCGCCTCCGTCTGGCCCCGCCCCTCCAGCCGCGTCCGGTCCGGCCGGGCCCGAACCGCGGAGCTACAGTGTGCTTTGAGTAGAAGCTGCACTGGGGCCGGGACTCGGAGGCGCGCTGCGTGAGCCGGCCGCAGAGCCATGGCGGGCGGGGAAGACCGCGGGGACGGAGAGCCGGTATCAGTGGTGACCGTGAGGGTGCAGTACCTGGAAGACACCGACCCCTTCGCATGTGCCAACTTTCCGGAGCCGCGCCGGGCCCCCACCTGCAGCCTGGACGGGGCGCTGCCCTTGGGCGCGCAGATACCCGCGGTGCACCGCCTGCTGGGAGCGCCGCTCAAG
Seq A exon
TTGGAGGATTGTGCTCTGCAAGTGTCTCCCTCCGGATACTACCTGGACACCGAGCTGTCCCTGGAAGAGCAGCGGGAGATGCTGGAGGGCTTCTATGAAGAGATCAG
Seq C2 exon
CAAAGGGCGGAAGCCCACGCTGATCCTTCGGACCCAGCTCTCTGTGAGGGTCAACGCTATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'0-7,'0-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000258201fB15740
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCGGTATCAGTGGTGA
R:
CCAAGATAGCGTTGACCCTCAC
Band lengths:
238-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains