DreEX6006128 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34277758-34288238:+
Coord C1 exon
chr7:34277758-34278064
Coord A exon
chr7:34281853-34281959
Coord C2 exon
chr7:34288174-34288238
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTATTTTTTTCTCAGCTT
3' ss Score
8.09
5' ss Seq
GGAGTAAGA
5' ss Score
4.36
Exon sequences
Seq C1 exon
CCTCCGCTTCAGTTCAGTCAGTGTTGACAGCGGCGCGTGGTGGGACGGTGATTTTTCTGTTTTTAGATGACTTCTAGTAACAAACAGAAGTTTTCGGTGGAAAGCGAGCTTCACTTTTAGTCGTTGTGACCACGGATAAGCCATGGCTACGATAACGTGTCGAGTGCAGTACCTGGAGGACTCGGACCCGTTTGTGTGCTCAAATTTCCCGGAGCCCCGCAGACCTCCGCAGTACGACTTTAATGAGCATTTGCCGCTGAACGAGCAGATCGCCGGTGTCCACAAACTGCTGGAAGCCCCACTAAAG
Seq A exon
CTTGAAGAGTGTGCACTGCAGCTGGCTTCCAATGGAAACTACCTGGATCTGGATTCTTCACTTGCTGAACAGAGAGATGATGTGGAGCAGCTCTATGATGACGTGGA
Seq C2 exon
AAAAGGAAAAAAGCCCATCTTGATTCTCCGTACGCAGCTTTCAGTGCGAGTTCATTCTATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000073447fB2756
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAAGCGAGCTTCACTT
R:
CTGAAAGCTGCGTACGGAGAA
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]