MmuEX6037913 @ mm9
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107862302-107871809:-
Coord C1 exon
chr8:107871553-107871809
Coord A exon
chr8:107862754-107862860
Coord C2 exon
chr8:107862302-107862366
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCCTTTGTTTCCAGCTG
3' ss Score
9.94
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTTGCAGCATTTGCAGGGGACACAAGAGGCGTCCAGCGGTAGCCGGTGGCAGAGCCATGGCGGGCGAGGAAGAGCGCGGGGATGGGGACCCAGTATCCGTGGTAACTGTGAGAGTGCAGTACCTGGAAGACACCGACCCTTTCGCTTGTGCCAACTTCCCGGAACCACGCCGGGCCCCCACCTGCAGCCTGGACGGGGCTCTGCCCCTGAGTGCGCAGATCCCTGCTCTGCACCGACTCCTGGGGGCGCCTCTTAAG
Seq A exon
CTGGAGGACTGTGCATTGCAAGTGTCTCCCTCCGGATACTACCTGGACCCGGAGCTGTCCCTAGAAGAACAGCGGGAGATGCTGGAGGGTTTCTATGAAGAGATCAG
Seq C2 exon
CAAAGGGCGGAAGCCCACGTTAATCCTGCGGACCCAGCTCTCCGTGAGGGTCAATGCTATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGAGCGCGGGGAT
R:
TAGCATTGACCCTCACGGAGA
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: