RnoEX6060261 @ rn6
Exon Skipping
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37294005-37303788:-
Coord C1 exon
chr19:37303569-37303788
Coord A exon
chr19:37294431-37294537
Coord C2 exon
chr19:37294005-37294069
Length
107 bp
Sequences
Splice sites
3' ss Seq
AGCTCTATTCCTGTTTCCAGCTG
3' ss Score
7.39
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GGCAGCCGGAGGCAGAGCCATGGCGGGCGAGGAAGAGCGCGGGGATGGGGACCCAGTATCAGTGGTGACTGTGAGAGTGCAGTACCTGGAAGACACCGACCCTTTCGCTTGTGCCAACTTCCCGGAACCACGCCGGGCCCCCACCTGCAGCTTGGACGGGGCTCTGCCCCTGAGTGCGCAGATCCCTGCTCTGCACCGACTCCTGGGAGCGCCTCTCAAG
Seq A exon
CTGGAGGACTGTGCGTTGCAAGTGTCGCCCTCTGGATACTACCTGGACCCGGAGCTGTCCCTAGAAGAACAGCGGGAGATGCTGGAGGGCTTCTATGAAGAGATCAG
Seq C2 exon
CAAAGGGCGGAAGCCCACATTGATCCTGCGGACCCAGCTCTCTGTGAGGGTCAATGCTATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625-'0-5,'0-4,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGAGCGCGGGGAT
R:
GCATTGACCCTCACAGAGAGC
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]