BtaEX6081131 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033248 | CDH3
Description
Bos taurus cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001244605]
Coordinates
chr18:36123443-36124185:+
Coord C1 exon
chr18:36123443-36123568
Coord A exon
chr18:36123800-36123955
Coord C2 exon
chr18:36124041-36124185
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCTTTTGCTTCCAGCTC
3' ss Score
9.47
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GAAAGGAAAGCACTGAAGATCTCCCCACCCGCACCTGTCTTACGAAGGCGCAAGAGAGAATGGGTGGTCCCGCCAATATCTGTGCCTGAGAATGGCAAGGGTCCTTTCCCCCAGAGGCTGAATCAG
Seq A exon
CTCAAATCTAATAAGGACAGAGGCACCAAGATTTTCTACAGCATCACGGGGCCTGGGGCAGACAGCCCACCAGAGGGTATCTTTGCTATAGAGAAGGAAACAGGCTGGTTGTTGCTGAATAAGCCACTGGACCGGGAGAAGATTGCCAAGTATGAG
Seq C2 exon
CTCTTTGGCCATGCTGTATCAGAGAACGGCGCCTCTGTGGAAGATCCCATGAACATCTCCATCATTGTAACAGACCAGAATGACCACAAGCCCAAGTTCACCCAGGATGTCTTCAGAGGGAGCGTCTTGGAAGGGGTGCTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033248-'9-5,'9-4,10-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.154 C2=0.224
Domain overlap (PFAM):
C1:
PF087586=Cadherin_pro=PD(4.5=7.1),PF0002812=Cadherin=PU(18.9=42.9)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTGAAGATCTCCCCACC
R:
TTCCAAGACGCTCCCTCTGAA
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]