MmuEX6038195 @ mm9
Exon Skipping
Gene
ENSMUSG00000061048 | Cdh3
Description
cadherin 3 [Source:MGI Symbol;Acc:MGI:88356]
Coordinates
chr8:109060461-109061118:+
Coord C1 exon
chr8:109060461-109060586
Coord A exon
chr8:109060716-109060871
Coord C2 exon
chr8:109060974-109061118
Length
156 bp
Sequences
Splice sites
3' ss Seq
CATTTTCCCTCTGTTTCCAGCTC
3' ss Score
10.49
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGAGGGAAGGATGCGATGCACTCCCCACCCACCCGCATCTTAAGGAGACGAAAGAGAGAGTGGGTGATGCCACCAATATTCGTCCCCGAGAATGGCAAGGGTCCCTTCCCTCAGAGGCTGAATCAG
Seq A exon
CTCAAATCTAATAAGGACAGAGGCACCAAGATTTTCTACAGCATCACAGGGCCTGGCGCAGACAGTCCCCCCGAAGGAGTCTTCACCATAGAGAAGGAGTCGGGCTGGCTGTTGTTGCATATGCCACTGGACAGGGAGAAGATTGTCAAGTACGAG
Seq C2 exon
CTTTATGGCCACGCTGTATCTGAGAATGGTGCCTCTGTAGAGGAGCCCATGAACATATCCATCATTGTGACAGACCAGAATGACAACAAGCCCAAGTTCACTCAAGACACCTTCAGAGGGAGTGTTCTGGAGGGAGTAATGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061048-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.260 C2=0.510
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(18.9=42.9)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATGCGATGCACTCCC
R:
CTCCCTCCAGAACACTCCCTC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: