RnoEX6060448 @ rn6
Exon Skipping
Gene
ENSRNOG00000020129 | Cdh3
Description
cadherin 3 [Source:RGD Symbol;Acc:621089]
Coordinates
chr19:38697183-38697861:+
Coord C1 exon
chr19:38697183-38697308
Coord A exon
chr19:38697460-38697615
Coord C2 exon
chr19:38697717-38697861
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCCTCTGCTTCTAGCTT
3' ss Score
8.81
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGAGGGAAGGGTGTGATGAACTCCCCACCCTCACGCATCTTACGGAGACGAAAGAGAGAGTGGGTGATGCCACCAATATCGGTCCCTGAGAATGGCAAAGGTCCTTTTCCTCAGAGGCTGAATCAG
Seq A exon
CTTAAATCTAATAAGGACAGAGGCACCAAGCTTTTCTACAGCATCACGGGGCCTGGAGCTGACAGTCCCCCTGAGGGAGTCTTCACCATAGAGAAGGAGACGGGCTGGCTGCTGTTGAATATGCCACTGGACAGGGAGAAAATTGTCAAGTATGAG
Seq C2 exon
CTTTTTGGCCACGCTGTATCTGAGAATGGTGCGTCTGTAGAGGAGCCCATGAACATATCCATCATTGTGACAGATCAGAATGACAACAAGCCCAAGTTCACTCAAGACACCTTCAGAGGGAGTGTTCCGGAGGGGGTAATGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020129-'8-5,'8-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.288 C2=0.694
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(18.9=42.9)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAACTCCCCACCCTCAC
R:
TCCGGAACACTCCCTCTGAAG
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]