GgaEX1014212 @ galGal4
Exon Skipping
Gene
ENSGALG00000026291 | CDH3
Description
cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr11:18313152-18313879:+
Coord C1 exon
chr11:18313152-18313271
Coord A exon
chr11:18313505-18313660
Coord C2 exon
chr11:18313735-18313879
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACCACCGCATCTCCTCCCAGATC
3' ss Score
9.24
5' ss Seq
CACGTAGGT
5' ss Score
6.85
Exon sequences
Seq C1 exon
GAGGTCCCCGATGTCCCCCGCGCTCACACCGCTCTGAGGAGGCAGAAGAGGGATTGGGTGATCCCTCCCATCAAAGTTCCCGAGAATGAGAGGGGTCCCTTCCCCAAAAACTTGGTTCAG
Seq A exon
ATCAAATCCAACCGCGACCGGGAGGCAAAGATTTTCTACAGCATCACCGGGCAGGGGGCGGATGCTCCCCCCGAGGGCATCTTCACCATTGAGAAGGAGACAGGCTGGATGAAGGTGACGCAGCCGCTGGACCGGGAGCACATCAACAAGTACCAC
Seq C2 exon
CTCTACTCCCATGCCGTGTCCGAAAATGGCAAACCCGTGGAGGAGCCGATGGAGATCATAGTGACGGTGACGGACCAAAATGACAACAAGCCCCAGTTCACACAGGAGGTGTTCCGGGGCTCCGTGCCTGAAGGCGCGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026291-'8-8,'8-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.365 C2=0.673
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(18.9=51.4)
A:
PF0002812=Cadherin=FE(53.7=100)
C2:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(11.0=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCCCCGATGTCCCC
R:
GAGCCCCGGAACACCTCC
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]