BtaEX6084584 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009948 | TRIM25
Description
Bos taurus tripartite motif containing 25 (TRIM25), mRNA. [Source:RefSeq mRNA;Acc:NM_001100336]
Coordinates
chr19:7942549-7943185:-
Coord C1 exon
chr19:7943159-7943185
Coord A exon
chr19:7942726-7942803
Coord C2 exon
chr19:7942549-7942647
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTCCCTTATCCCAGGCT
3' ss Score
7.7
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AAGAAGAGAAGAAGCCCAGGAAACCTG
Seq A exon
GCTCTGCCTTACTCAACAAGCCTGTCACCTTTGGATCCTCGGAACACTTAGTGAATCCCAAACTAACTGTCCAGGAGG
Seq C2 exon
GTGCAGCCAAAGCCCCTCCCGTGCCGCCGACCTCAGCGTCTCTCAACGCCAAGGTGCTGGAGAACTTCCTAACCAAGTCCAGGCCGGAGCTCCTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009948-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.481 C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAGAAGAAGCCCAGGA
R:
GAGCTCCGGCCTGGACTT
Band lengths:
119-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]