MmuEX0048878 @ mm10
Exon Skipping
Gene
ENSMUSG00000000275 | Trim25
Description
tripartite motif-containing 25 [Source:MGI Symbol;Acc:MGI:102749]
Coordinates
chr11:89015167-89015817:+
Coord C1 exon
chr11:89015167-89015190
Coord A exon
chr11:89015533-89015631
Coord C2 exon
chr11:89015719-89015817
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTCCTCACCTCCCAGCTG
3' ss Score
9.95
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AAGAAAAGAAGACCAAGAAAACCC
Seq A exon
CTGTTGCTCCCGGCCCTCCCTCCCACTTCTCACCTAACAAGTTGCCCACCTTTGGAGCTCCTGGCCAATCACTGGATTCAAAAGCAACTTCCCCTGATG
Seq C2 exon
CCGCACCCAAAGCCAGTGCTGCACAGCCAGACTCTGTAGGAGTCAAGGCTAAGGTGCTAGAAAACTTCTTAACCAAGTCCAGAACGGAGCTTCTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000275_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAGAAGACCAAGAAAACCC
R:
TCCAGAAGCTCCGTTCTGGAC
Band lengths:
120-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types