DreEX0081160 @ danRer10
Exon Skipping
Gene
ENSDARG00000104396 | trim25
Description
tripartite motif containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-797]
Coordinates
chr6:21918681-21921456:-
Coord C1 exon
chr6:21921427-21921456
Coord A exon
chr6:21921082-21921180
Coord C2 exon
chr6:21918681-21918737
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGAAATACCTCCTTTGCCAGGAT
3' ss Score
5.44
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
ACAGGAGGGATACTAAAGAGAAGCCAAACA
Seq A exon
GATCCAAGAATCCCACTCAAGGGATAAATCCAGTTTTCTCCAAAAGCATGGACAACTTGAATGAACTCAGACCTAAAACTGTAGACATAATTGACATAA
Seq C2 exon
ATCAACCTGCAAGTTCATCAGCTGTGCAAAACGTTAAAAGGAGTGATCTACTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104396-'10-13,'10-10,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.746 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGGGATACTAAAGAGAAGCC
R:
AGATCACTCCTTTTAACGTTTTGCAC
Band lengths:
79-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]