RnoEX6049155 @ rn6
Exon Skipping
Gene
ENSRNOG00000002341 | Trim25
Description
tripartite motif-containing 25 [Source:RGD Symbol;Acc:1594396]
Coordinates
chr10:76359711-76360408:+
Coord C1 exon
chr10:76359711-76359734
Coord A exon
chr10:76360098-76360220
Coord C2 exon
chr10:76360310-76360408
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCCCTCGCCTCCCAGCTG
3' ss Score
10.52
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CGGACAAGAAGACCAAGAAAACCC
Seq A exon
CTGGTGCTGCGGGTGCTGCCGGTGCTGCCGGTGCTGCTGGTGCTGCCGGTCCTACCTCCTACTCTTCCTCATCTAACAAGTTGCCCACCTTTGGAGCTCCTGGACAAGCAACTATCCCTGATG
Seq C2 exon
CCACACTCAAACCCAATGCTCCACAACCAAACTCGGCAGCCGTCAAGGCTAAGGTGTTAGAAAACTTCTTAACCATGTCCAGAACAGAGCTTCTGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002341-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.881 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACAAGAAGACCAAGAAAACC
R:
TTCCAGAAGCTCTGTTCTGGAC
Band lengths:
122-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]