HsaEX0067070 @ hg38
Exon Skipping
Gene
ENSG00000121060 | TRIM25
Description
tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]
Coordinates
chr17:56895343-56895952:-
Coord C1 exon
chr17:56895926-56895952
Coord A exon
chr17:56895521-56895604
Coord C2 exon
chr17:56895343-56895441
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTCCTTACCCCCAGCCC
3' ss Score
10.64
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AAGAGGAAAAGAAATCCAAGAAACCTC
Seq A exon
CCCCTGTCCCTGCCTTACCCAGCAAGCTTCCCACGTTTGGAGCCCCGGAACAGTTAGTGGATTTAAAACAAGCTGGCTTGGAGG
Seq C2 exon
CTGCAGCCAAAGCCACCAGCTCACATCCGAACTCAACATCTCTCAAGGCCAAGGTGCTGGAGACCTTCCTGGCCAAGTCCAGACCTGAGCTCCTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121060_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.379 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAAAGAAATCCAAGAAACCT
R:
AGGAGCTCAGGTCTGGACTTG
Band lengths:
120-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development