HsaEX0067070 @ hg19
Exon Skipping
Gene
ENSG00000121060 | TRIM25
Description
tripartite motif containing 25 [Source:HGNC Symbol;Acc:12932]
Coordinates
chr17:54972704-54973313:-
Coord C1 exon
chr17:54973287-54973313
Coord A exon
chr17:54972882-54972965
Coord C2 exon
chr17:54972704-54972802
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTCCTTACCCCCAGCCC
3' ss Score
10.64
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AAGAGGAAAAGAAATCCAAGAAACCTC
Seq A exon
CCCCTGTCCCTGCCTTACCCAGCAAGCTTCCCACGTTTGGAGCCCCGGAACAGTTAGTGGATTTAAAACAAGCTGGCTTGGAGG
Seq C2 exon
CTGCAGCCAAAGCCACCAGCTCACATCCGAACTCAACATCTCTCAAGGCCAAGGTGCTGGAGACCTTCCTGGCCAAGTCCAGACCTGAGCTCCTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121060-'7-10,'7-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.379 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAAAGAAATCCAAGAAACCT
R:
AGGAGCTCAGGTCTGGACTTG
Band lengths:
120-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)