BtaEX6085201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015527 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr19:17774705-17778143:+
Coord C1 exon
chr19:17774705-17774870
Coord A exon
chr19:17776536-17776589
Coord C2 exon
chr19:17778048-17778143
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTCCCCCCTTAGTCT
3' ss Score
9.86
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGTGAAGAATATGTTGCTTAAGTCTAACTGTGTCCTGGAAGCTTTTGGAAATGCCAAAACCAACCGCAATGACAACTCAAGCAGGTTTGGAAAATACATGGATATCAACTTTGATTTCAAGGGAGACCCGATTGGTGGACACATCAATAACTACTTATTGGAGAAG
Seq A exon
TCTCGAGTTATTGTGCAACAGCCAGGAGAAAGGAGCTTTCATTCTTTCTATCAG
Seq C2 exon
CTGCTGCAAGGAGGTTCGGACCAGATGCTACGTTCTCTGCACCTCCAGAAATCCTTGTCATCCTACAGCTACATCCATGTTGGAGCCCAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015527-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.9=100)
A:
PF0006316=Myosin_head=FE(2.5=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCAATGACAACTCAAGCA
R:
AGAACGTAGCATCTGGTCCGA
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]