DreEX0006130 @ danRer10
Exon Skipping
Gene
ENSDARG00000036863 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr12:28386335-28389584:-
Coord C1 exon
chr12:28389419-28389584
Coord A exon
chr12:28386722-28386775
Coord C2 exon
chr12:28386335-28386430
Length
54 bp
Sequences
Splice sites
3' ss Seq
TATTTAAATTTCTTCCTCAGTCC
3' ss Score
7.45
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGAAAAACATGCTGCTGAAGTCCAACTGTGTCCTCGAGGCTTTTGGAAATGCCAAGACCAACCGCAATGATAACTCCAGCCGGTTCGGCAAGTACATGGACATCAACTTTGATTTTAAAGGAGACCCCATTGGCGGCCATATCAACAACTACCTGCTTGAGAAG
Seq A exon
TCCCGAGTCATCTTTCAGCAGGAAGGAGAGAGGAGTTTCCACTCTTTCTACCAG
Seq C2 exon
CTGGTGAAAGGAGCTCCAGATGCTCAGCTGCGATCCCTGCACATTCAGAGAGACCCCACAGCATATAACTACATTAAAGTGGGAGGCCAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036863-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
PF0006316=Myosin_head=FE(2.5=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATGCCAAGACCAACCG
R:
GCATCTGGAGCTCCTTTCACC
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]