GgaEX1038071 @ galGal3
Exon Skipping
Gene
ENSGALG00000000674 | MYO1D
Description
NA
Coordinates
chr27:1396658-1397799:+
Coord C1 exon
chr27:1396658-1396823
Coord A exon
chr27:1397042-1397095
Coord C2 exon
chr27:1397698-1397799
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTCTCTCCCTGCAGTCT
3' ss Score
10.17
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GGTGAAGAACATCCTGCTGAAGTCCAACTGTGTGTTGGAGGCCTTTGGCAACGCCAAGACGAACCGTAACGACAATTCCAGCCGCTTTGGGAAGTACATGGACATCAACTTCGACTTCAAAGGAGACCCAATCGGCGGCCACATCAACAATTACTTGCTAGAAAAG
Seq A exon
TCTCGTGTGATCGTGCAGCAGCCAGGAGAGCGGAGCTTTCACTCTTTTTACCAG
Seq C2 exon
ACCCAGCTCCTCCAGGGGGGGTCTGACCAGATGCTGCGCTCTCTACATCTGCAGAAGGATGCGTCTGCATACAGCTACATCTCTCCTGGAGCACAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674-'4-8,'4-7,5-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.1=100)
A:
PF0006316=Myosin_head=FE(2.5=100)
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGCTTTGGGAAGTACATG
R:
CTGCAGATGTAGAGAGCGCAG
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]