GgaEX1038071 @ galGal4
Exon Skipping
Gene
ENSGALG00000000674 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr27:1447659-1448800:+
Coord C1 exon
chr27:1447659-1447824
Coord A exon
chr27:1448043-1448096
Coord C2 exon
chr27:1448705-1448800
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTCTCTCCCTGCAGTCT
3' ss Score
10.17
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GGTGAAGAACATCCTGCTGAAGTCCAACTGTGTGTTGGAGGCCTTTGGCAACGCCAAGACGAACCGTAACGACAATTCCAGCCGCTTTGGGAAGTACATGGACATCAACTTCGACTTCAAAGGAGACCCAATCGGCGGCCACATCAACAATTACTTGCTAGAAAAG
Seq A exon
TCTCGTGTGATCGTGCAGCAGCCAGGAGAGCGGAGCTTTCACTCTTTTTACCAG
Seq C2 exon
CTCCTCCAGGGGGGGTCTGACCAGATGCTGCGCTCTCTACATCTGCAGAAGGATGCGTCTGCATACAGCTACATCTCTCCTGGAGCACAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.2=100)
A:
PF0006316=Myosin_head=FE(2.5=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGCTTTGGGAAGTACATG
R:
CTGCAGATGTAGAGAGCGCAG
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]