RnoEX0057300 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68052888-68056836:-
Coord C1 exon
chr10:68056671-68056836
Coord A exon
chr10:68055285-68055338
Coord C2 exon
chr10:68052888-68052983
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTAAAAATATTTTTCCTCAGTCT
3' ss Score
6.57
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGTGAAGAATATGTTGCTGAAGTCAAACTGTGTTTTGGAAGCTTTTGGAAATGCCAAAACCAATCGCAATGACAATTCCAGCAGGTTTGGGAAATACATGGATATCAACTTTGACTTCAAGGGAGACCCCATTGGGGGACATATTAATAACTACTTGCTGGAAAAG
Seq A exon
TCTCGTGTAATTGTGCAACAGCCCGGAGAACGAAGCTTCCATTCTTTCTATCAG
Seq C2 exon
CTACTTCAGGGAGGTTCCGAGCAGATGCTGCATTCTCTACATCTGCAGAAATCACTCTCATCCTACAACTACATCCGTGTGGGGGCACAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276-'14-12,'14-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(16.2=100)
A:
PF0006316=Myosin_head=FE(2.5=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATGCCAAAACCAATCGCA
R:
GCTCGGAACCTCCCTGAAGTA
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]