MmuEX0030490 @ mm10
Exon Skipping
Gene
ENSMUSG00000035441 | Myo1d
Description
myosin ID [Source:MGI Symbol;Acc:MGI:107728]
Coordinates
chr11:80680020-80684490:-
Coord C1 exon
chr11:80684325-80684490
Coord A exon
chr11:80682382-80682435
Coord C2 exon
chr11:80680020-80680115
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAAAAAAATTTTTTTCTCAGTCT
3' ss Score
5.01
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGTGAAGAATATGTTGCTGAAGTCAAACTGCGTTTTGGAAGCTTTTGGAAATGCCAAAACCAATCGTAATGACAATTCCAGCAGGTTTGGGAAATACATGGATATCAACTTTGACTTCAAGGGAGACCCCATTGGGGGACATATTAATAACTACTTGCTGGAAAAG
Seq A exon
TCTCGTGTGATTGTGCAGCAGCCTGGAGAACGGAGCTTCCATTCTTTCTATCAG
Seq C2 exon
CTCCTCCAGGGAGGTTCTGAGCAGATGCTGCACTCTCTTCACCTGCAGAAGTCACTCTCATCCTACAACTACATCCGTGTGGGGGCACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035441-'14-10,'14-9,16-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
PF0006316=Myosin_head=FE(2.5=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTCCAGCAGGTTTGGGA
R:
CTGCAGGTGAAGAGAGTGCAG
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types