BtaEX6085566 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20883088-20884404:-
Coord C1 exon
chr19:20884238-20884404
Coord A exon
chr19:20883477-20883671
Coord C2 exon
chr19:20883088-20883226
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTGGGTCCTGTGGTTTGCAGCCT
3' ss Score
7.23
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCTCATCATCCGTAATGGGGACAACGTGGAGGCCCCGCCCGTGTATGATTCCTACGAGGTGGAGTACCTGCCCATTGAGGGCCTGCTCAGCTCCAGCCGACACTTCTTCGTGGAGCTCAGTACTGACAGCAGTGGGGTGGCTGCGGGCATGGCCCTGCGCTACGAGG
Seq A exon
CCTTCCAGCAAGGCCATTGCTACGAGCCCTTTGTCAAATACGGCAACTTCAGCAGCAGCGCACCCTCTTACCCTGTGGGGACCACCGTGGAGTTCAGCTGCGACCCCGGCTACACTCTGGAGCAGGGCTCCATCATCATTGAGTGCGTGGACCCCCACGACCCTCAGTGGAATGAGACAGAGCCCGCCTGCCGAG
Seq C2 exon
CCGTGTGTAGTGGAGAGACCACAGACTCGGCTGGCGTGGTGCTCTCCCCCAACTGGCCAGAGCCGTACGGCCGTGGGCAGGACTGCATCTGGGGCGTGCATGTGGAGGAAGACAAGCGCATCATGTTGGACGTCCGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979-'10-15,'10-12,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(49.5=94.7)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCGTGTATGATTCCTACG
R:
GCTTGTCTTCCTCCACATGCA
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]