RnoEX0079948 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64870377-64871970:-
Coord C1 exon
chr10:64871804-64871970
Coord A exon
chr10:64870737-64870931
Coord C2 exon
chr10:64870377-64870515
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTGGGTCCTGTGCTTCACAGCCT
3' ss Score
7.06
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GCTCATCATCCGTAACGGGAATAACGTGGAGGCCCCGCCAGTGTATGACTCCTATGAGGTGGAGTACCTGCCCATTGAGGGCCTGCTCAGTTCTGGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGCGGGGCAGCCGCAGGCATGGCACTGCGCTATGAGG
Seq A exon
CCTTCCAGCAAGGACATTGCTATGAGCCCTTTGTCAAATACGGTAACTTCAGCAGCAGCGCACCGTCCTACCCTGTGGGTACGACTGTGGAGTTCAGCTGTGACCCTGGCTACACCCTGGAGCAGGGTTCCATCATCATCGAATGCGTCGACCTCCGTGACCCCCAGTGGAATGAGACAGAACCAGCCTGCCGAG
Seq C2 exon
CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-'17-12,'17-11,18-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(49.5=94.7)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.7=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCAGTGTATGACTCCTA
R:
CTTGTCCTCCTCCACATGCAC
Band lengths:
250-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]