MmuEX6087804 @ mm9
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77786596-77787831:+
Coord C1 exon
chr11:77786596-77786762
Coord A exon
chr11:77787285-77787479
Coord C2 exon
chr11:77787693-77787831
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTGGGTCCTGTGGTTCACAGCCT
3' ss Score
6.69
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GCTCATCATCCGCAATGGAAATAACGTGGAGGCCCCGCCGGTGTACGACTCCTATGAGGTGGAATACCTGCCCATTGAGGGCCTGCTCAGCTCTGGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGG
Seq A exon
CCTTCCAGCAAGGACATTGCTATGAGCCCTTTGTCAAATACGGCAACTTCAGCAGCAGTGCACCGTCCTACCCTGTGGGTACAACTGTGGAGTTCAGCTGTGACCCTGGCTACACCCTGGAGCAGGGCTCCATCATCATCGAATGCGTCGACCTCCACGACCCCCAGTGGAATGAGACAGAGCCAGCCTGCCGAG
Seq C2 exon
CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'11-14,'11-12,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.042 C2=0.016
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(49.5=94.7)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.7=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAATACCTGCCCATTGA
R:
CTCGGATGTCCAGCATGATGC
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: