DreEX0065585 @ danRer10
Exon Skipping
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24555190-24565412:+
Coord C1 exon
chr15:24555190-24555356
Coord A exon
chr15:24561137-24561331
Coord C2 exon
chr15:24565274-24565412
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTATGGTGTGTCCTCTCAGCTT
3' ss Score
6.99
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
GTTTTTGATCAAAAACGGCAACCATATTGACTCACCCATCGTGTATGACTCGTATGAGGTGGAATACCTTCCTAATGAGGGAGTCGCTAGTTCCTCCAGACATCTCTTTGTGGAGTTCACTACAGATGGTTTCGGCACCAACACAGGAATGGCCATCCGATATGAAG
Seq A exon
CTTTTGCAGCGGGGCATTGCTACGAGCCATTCGTCAAGTACGGCAACTTCACCACCACTGACAGCACCTATGCTGTGGGCACGGTTGTGGAGTTCACCTGTGACCCCGGATACACTCTGGAGCAGGGCTCCGTTATCATCGAGTGCATGGATCCCAGCAACCCTCAGTGGAACGAGACTGAGCCCACCTGCAGAG
Seq C2 exon
CTGTTTGCAGTGGTGAGATCACAGATTCAGCTGGGATGGTCTTGTCTCCAAACTGGCCTGAGGCCTATGATAAGGGTCAGGACTGCATCTGGGGCATCCATGTTGAGGAGGACAAAAGGATCATGCTGGACATCCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(49.5=94.7)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCATCGTGTATGACTCGT
R:
GTCCTCCTCAACATGGATGCC
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]