MmuEX6087804 @ mm10
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77973094-77974329:+
Coord C1 exon
chr11:77973094-77973260
Coord A exon
chr11:77973783-77973977
Coord C2 exon
chr11:77974191-77974329
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTGGGTCCTGTGGTTCACAGCCT
3' ss Score
6.69
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GCTCATCATCCGCAATGGAAATAACGTGGAGGCCCCGCCGGTGTACGACTCCTATGAGGTGGAATACCTGCCCATTGAGGGCCTGCTCAGCTCTGGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGG
Seq A exon
CCTTCCAGCAAGGACATTGCTATGAGCCCTTTGTCAAATACGGCAACTTCAGCAGCAGTGCACCGTCCTACCCTGTGGGTACAACTGTGGAGTTCAGCTGTGACCCTGGCTACACCCTGGAGCAGGGCTCCATCATCATCGAATGCGTCGACCTCCACGACCCCCAGTGGAATGAGACAGAGCCAGCCTGCCGAG
Seq C2 exon
CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'18-19,'18-17,20-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.031 C2=0.013
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(49.5=94.7)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.7=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAATACCTGCCCATTGA
R:
CTCGGATGTCCAGCATGATGC
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types